IGI gLite 3.2 Update 32/33/34/35 (SL5/x86_64) - 10/02/2012

In this IGI update we take just a subset of profiles from the gLite 3.2 release. In particular:

  • CREAM CE
  • Torque_[sever|client|utils]
  • WN
  • UI

NOTES (read before you start)

VERY IMPORTANT NOTE
Due to conflicts between new and old versions of various packages the repository glite-generic should be disabled:
# mv /etc/yum.repos.d/glite-generic.repo /etc/yum.repos.d/glite-generic.repo.disabled
# yum clean all
One of the main consequences of having the same packages but with different versions in repositories for different services/node-types is that the installation/configuration of two or more profiles/node-types on the same machine is no more supported!!!

NEWS

MAIN NEWS:
  • CREAM - Version 3.2.14-1 provides:
    • an updated BLAH to address some problems when SGE is used as batch system in the CREAM CE
      • Known issues (details)
        • First time that run BUpdaterSGE after a long time, if there are a lot of jobs in non final state (removed or completed) in the job registry, many hours can be required to synchronize BUpdaterSGE daemon with the actual status, because a qstat of every pending job is needed.
    • a fix in the glite-security-lcmaps-plugins-verify-proxy package. The fix addresses a problem affecting users holding a Terena grid certificate when they submit to CREAM through WMS.
    • more details: CREAM v. 3.2.13-1, CREAM v. 3.2.14-1 |

  • UI - Version 3.2.11 of the glite-UI - it includes the following changes:
    • GFAL/lcg_utils has been updated to version 1.11.16-3. (patch #4642). Amongst other fixes this version avoids the generation of debug log files
    • DPM and LFC clients have been upgraded to version 1.8.2. (patches #5005, #5003). The clients correspond to new releases of the services. The updated clients include some bug fixes and in the case of DPM also new features. DPM 1.8.2 can use a new filesystem selection algorithm based on weights. To allow for manipulation of the weights some of the existing clients have new options. As usual older clients continue to work but manipulation of new settings is not possible.
    • The FTS clients (glite-transfer-* commands) have been updated to correspond to FTS release 2.2.5. (patch #3758). The utility script glite-transfer-se-set has been added (bug #61780).
    • L&B clients have been updated to correspond to L&B release 2.1.21. (patch #4623)
    • Known issues:
      • As with all glite-UI releases the correct way to update from a previous (RPM) based release is to use *yum groupupdate glite-UI*
      • The grid-env.sh written by yaim does not work with the standard version of zsh with SL5. See the known issue page
    • More details about bug fixes & features

  • WN - Version 3.2.12 of the glite-WN - it includes the following changes:
    • GFAL/lcg_utils has been updated to version 1.11.16-3. (patch #4642). Amongst other fixes this version avoids the generation of debug log files.
    • DPM and LFC clients have been upgraded to version 1.8.2. (patches #5005, #5003). The clients correspond to new releases of the services. The updated clients include some bug fixes and in the case of DPM also new features. DPM 1.8.2 can use a new filesystem selection algorithm based on weights. To allow for manipulation of the weights some of the existing clients have new options. As usual older clients continue to work but manipulation of new settings is not possible.
    • The FTS clients (glite-transfer-* commands) have been updated to correspond to FTS release 2.2.5. (patch #3758). The utility script glite-transfer-se-set has been added (bug #61780).
    • L&B clients have been updated to correspond to L&B release 2.1.21. (patch #4623).
    • More details about bug fixes & features

  • ig-yaim - version 4.0.14-11
    • ig-site-info.def - updating magic and superb.vo (tkt #12746)
    • ig-groups.conf - updating group information for various VOs, eliminating wildcards (tkt #12771)

Prerequisites

References for gLite 3.2 Updates

Reference packages

Package Version
ig-metapackages ig27_sl5
ig-yaim 4.0.14-11
ig-yaim-core 4.0.14-1

Instructions

Checking/Updating YUM configuration

  • Repository settings

Please check the instructions you find at the following link - IGI Repository settings for gLite 3.2

yum-autoupdate settings:
As good practice is suggested to disable the yum-autoupdate service. Any other settings is decided at site-manager own risk!
To disable the service it is available the following script "disable_yum.sh" (thanks Giuseppe Platania) that can be used to REALLY disable yum-autoupdate.

Updating profiles

Find your nodetype and carefully follow the corresponding actions.

Profiles Metapackages INSTALLATION Nodetypes CONFIGURATION Service restart Partial reconf Total reconf Actions Notes
CREAM ig_CREAM
ig_CREAM_LSF
ig_CREAM_torque
ig_CREAM
ig_CREAM_LSF
ig_CREAM_torque
X - X Metapackage update
Nodetype_reconfiguration
Middleware_services_restart
Pay atention to torque details
UI ig_UI
ig_UI_noafs
ig_UI
ig_UI_noafs
- - X Metapackage update
Nodetype_reconfiguration
-
WN ig_WN
ig_WN_noafs
ig_WN_LSF
ig_WN_LSF_noafs
ig_WN_torque
ig_WN_torque_noafs
ig_WN
ig_WN_noafs
ig_WN_LSF
ig_WN_LSF_noafs
ig_WN_torque
ig_WN_torque_noafs
- - X Metapackage update
Nodetype_reconfiguration
Pay atention to torque details

Actions

Each of the following sections reports the actions that may be follow in order to upgrade your profiles. Please execute ONLY the actions listed on the table above in the column "Actions" and in the row corresponding to your profile!

Metapackage update

  • Please see yum tips for additional information about YUM.

  • Update YUM metadata and install the new rpms.

# yum clean all
# yum install 

Please remember that on case of WN (ALL WNs) you should use the "groupinstall", for ex.:

yum groupinstall ig_WN_torque

On CE CREAM

  • Before installing/updating a CREAM CE remember to install xml-commons-apis:
 yum update xml-commons-apis 

  • When installing/updating a CREAM CE node, a dependency problem such as:
Error: Missing Dependency: libcares.so.0()(64bit) is needed by package glite-security-gss-2.0.0-6.sl5.x86_64
can be seen. In this case, the update should be done doing:
 yum update --exclude=c-ares 
Please note that doing:
 yum update ig-CREAM_torque 
or
 yum update ig-CREAM_LSF 
you are not guaranteed to have all relevant RPMs updated.

  • When installing/updating ig_CREAM_torque (in general torque node-types) remember to change the torque directory, if not already done:
# /etc/init.d/pbs_server stop
# mv /var/spool/pbs /var/torque
# ln -s /var/torque /var/spool/pbs
# /etc/init.d/pbs_server start

New versions of torque-* packages require actions before configuring

        Install the munge package on your pbs_server and submission hosts in your cluster.
        On one host generate a key with /usr/sbin/create-munge-key
        Copy the key, /etc/munge/munge.key to your pbs_server and submission hosts on your cluster.
        Start the munge daemon on these nodes.. service munge start && chkconfig munge on
Briefly, you should execute:
# /usr/sbin/create-munge-key
# scp /etc/munge/munge.key <all cluster node>
# service munge start
# chkconfig munge on

Editing local configuration files

  • In the last updates many variables have been changed or moved to services/ and defaults/ directories. Please carefully check your <site-info.def> and files under services/ and nodes/ directories comparing to the new ones distributed with latest released yaim modules. For example you can use vimdiff like here below:

# vimdiff /opt/glite/yaim/examples/siteinfo/ig-site-info.def <site-info.def>

Important Note
Remember to add the variable TORQUE_VAR_DIR in services and change the BATCH_LOG_DIR in ig-site-info.def to /var/torque

You may find more detailed information on configuration files structure here:

and on configuration variables here:

Nodetype reconfiguration
IMPORTANT: /services directory
Please ensure that you have all the NEEDED configuration files under your ''/services'' directory (for example: ''ig-se_dpm_mysql'', ''ig-se_dpm_disk'', ...).
Remember to add the variable TORQUE_VAR_DIR in services and change the BATCH_LOG_DIR in ig-site-info.def to /var/torque

For any details please refer to the reference "IGI YAIM configuration files”

  • Reconfigure the nodetype

/opt/glite/yaim/bin/ig_yaim -c -s <site-info.def> -n <nodetype>

Where is one of the nodetypes listed in the*Nodetypes* column of the table above.

Middleware services restart

Look at your chkconfig services list and restart all middleware-related service:

chkconfig --list | grep 3:on | sort

Then restart with:

service <middleware-service> restart
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Topic revision: r6 - 2012-02-10 - CristinaAiftimiei
 
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