[root@cream-03 yum.repos.d]# yum update Loaded plugins: kernel-module Repository sl-base is listed more than once in the configuration Repository sl-security is listed more than once in the configuration Repository sl-fastbugs is listed more than once in the configuration Repository sl-contrib is listed more than once in the configuration ETICS-name-patch_3777_3 | 764 B 00:00 ETICS-name-patch_4366_1 | 764 B 00:00 glite-UI | 1.1 kB 00:00 glite-UI_ext | 951 B 00:00 glite-UI_updates | 1.1 kB 00:00 Excluding Packages from DAG (http://dag.wieers.com) add-on packages, no formal support from CERN Finished Setting up Update Process Resolving Dependencies --> Running transaction check ---> Package MySQL-server-community.x86_64 0:5.1.39-0.rhel5 set to be updated ---> Package glite-ce-cream-cli.x86_64 0:1.13.1-0.sl5 set to be updated ---> Package glite-ce-cream-client-api-c.x86_64 0:1.13.1-0.sl5 set to be updated ---> Package glite-ce-monitor-client-api-c.x86_64 0:1.13.1-0.sl5 set to be updated ---> Package glite-security-gsoap-plugin.x86_64 0:2.1.2-2.sl5 set to be updated ---> Package glite-security-util-java.noarch 0:2.8.6-1.GL32 set to be updated ---> Package glite-security-voms-api-cpp.x86_64 0:1.9.19-2.sl5 set to be updated ---> Package gridsite-commands.x86_64 0:1.7.9-3.sl5 set to be updated ---> Package gridsite-shared.x86_64 0:1.7.9-3.sl5 set to be updated --> Finished Dependency Resolution Beginning Kernel Module Plugin Finished Kernel Module Plugin Dependencies Resolved ============================================================================================================================= Package Arch Version Repository Size ============================================================================================================================= Installing: MySQL-server-community x86_64 5.1.39-0.rhel5 egi-sam 20 M replacing mysql.x86_64 5.0.77-4.el5_5.4 Updating: glite-ce-cream-cli x86_64 1.13.1-0.sl5 ETICS-name-patch_4366_1 3.1 M glite-ce-cream-client-api-c x86_64 1.13.1-0.sl5 ETICS-name-patch_4366_1 2.6 M glite-ce-monitor-client-api-c x86_64 1.13.1-0.sl5 ETICS-name-patch_4366_1 2.7 M glite-security-gsoap-plugin x86_64 2.1.2-2.sl5 ETICS-name-patch_4366_1 3.5 M glite-security-util-java noarch 2.8.6-1.GL32 ETICS-name-patch_4366_1 328 k glite-security-voms-api-cpp x86_64 1.9.19-2.sl5 ETICS-name-patch_4366_1 4.5 M gridsite-commands x86_64 1.7.9-3.sl5 ETICS-name-patch_4366_1 29 k gridsite-shared x86_64 1.7.9-3.sl5 ETICS-name-patch_4366_1 129 k Transaction Summary ============================================================================================================================= Install 1 Package(s) Upgrade 8 Package(s) Total download size: 37 M Is this ok [y/N]: y Downloading Packages: (1/9): gridsite-commands-1.7.9-3.sl5.x86_64.rpm | 29 kB 00:00 (2/9): gridsite-shared-1.7.9-3.sl5.x86_64.rpm | 129 kB 00:00 (3/9): glite-security-util-java-2.8.6-1.GL32.noarch.rpm | 328 kB 00:00 (4/9): glite-ce-cream-client-api-c-1.13.1-0.sl5.x86_64.rpm | 2.6 MB 00:00 (5/9): glite-ce-monitor-client-api-c-1.13.1-0.sl5.x86_64.rpm | 2.7 MB 00:00 (6/9): glite-ce-cream-cli-1.13.1-0.sl5.x86_64.rpm | 3.1 MB 00:00 (7/9): glite-security-gsoap-plugin-2.1.2-2.sl5.x86_64.rpm | 3.5 MB 00:00 (8/9): glite-security-voms-api-cpp-1.9.19-2.sl5.x86_64.rpm | 4.5 MB 00:00 (9/9): MySQL-server-community-5.1.39-0.rhel5.x86_64.rpm | 20 MB 00:05 ----------------------------------------------------------------------------------------------------------------------------- Total 4.5 MB/s | 37 MB 00:08 Running rpm_check_debug Running Transaction Test Finished Transaction Test Transaction Test Succeeded Running Transaction Updating : gridsite-shared 1/19 /sbin/ldconfig: /usr/lib64/libxmlrpc_server_abyss++.so.4 is not a symbolic link /sbin/ldconfig: /usr/lib64/libxmlrpc.so.3 is not a symbolic link /sbin/ldconfig: /usr/lib64/libxmlrpc_server_cgi.so.3 is not a symbolic link /sbin/ldconfig: /usr/lib64/libxmlrpc_server.so.3 is not a symbolic link /sbin/ldconfig: /usr/lib64/libxmlrpc_cpp.so.4 is not a symbolic link /sbin/ldconfig: /usr/lib64/libxmlrpc_server++.so.4 is not a symbolic link /sbin/ldconfig: /usr/lib64/libxmlrpc_xmltok.so.3 is not a symbolic link /sbin/ldconfig: /usr/lib64/libxmlrpc_util.so.3 is not a symbolic link /sbin/ldconfig: /usr/lib64/libxmlrpc_packetsocket.so.4 is not a symbolic link /sbin/ldconfig: /usr/lib64/libxmlrpc++.so.4 is not a symbolic link /sbin/ldconfig: /usr/lib64/libxmlrpc_server_abyss.so.3 is not a symbolic link /sbin/ldconfig: /usr/lib64/libxmlrpc_server_cgi++.so.4 is not a symbolic link /sbin/ldconfig: /usr/lib64/libxmlrpc_server_pstream++.so.4 is not a symbolic link /sbin/ldconfig: /usr/lib64/libxmlrpc_abyss.so.3 is not a symbolic link /sbin/ldconfig: /usr/lib64/libxmlrpc_xmlparse.so.3 is not a symbolic link Updating : glite-security-gsoap-plugin 2/19 Updating : glite-security-voms-api-cpp 3/19 Updating : glite-ce-cream-client-api-c 4/19 ****************************************************************** A MySQL server package (mysql-server-5.0.77-4.el5_5.4) is installed. The current MySQL server package is provided by a different vendor (Scientific Linux) than MySQL AB or Sun Microsystems, Inc.. Some files may be installed to different locations, including log files and the service startup script in /etc/init.d/. Upgrading directly from MySQL 5.0 to MySQL 5.1 may not be safe in all cases. A manual dump and restore using mysqldump is recommended. It is important to review the MySQL manual's Upgrading section for version-specific incompatibilities. A manual upgrade is required. - Ensure that you have a complete, working backup of your data and my.cnf files - Shut down the MySQL server cleanly - Remove the existing MySQL packages. Usually this command will list the packages you should remove: rpm -qa | grep -i '^mysql-' You may choose to use 'rpm --nodeps -ev ' to remove the package which contains the mysqlclient shared library. The library will be reinstalled by the MySQL-shared-compat package. - Install the new MySQL packages supplied by Sun Microsystems, Inc. - Ensure that the MySQL server is started - Run the 'mysql_upgrade' program This is a brief description of the upgrade process. Important details can be found in the MySQL manual, in the Upgrading section. ****************************************************************** error: %pre(MySQL-server-community-5.1.39-0.rhel5.x86_64) scriptlet failed, exit status 1 error: install: %pre scriptlet failed (2), skipping MySQL-server-community-5.1.39-0.rhel5 Updating : glite-ce-cream-cli 6/19 Updating : glite-security-util-java 7/19 Updating : gridsite-commands 8/19 Updating : glite-ce-monitor-client-api-c 9/19 Cleanup : glite-ce-cream-client-api-c 10/19 Cleanup : glite-ce-cream-cli 11/19 Cleanup : glite-security-util-java 12/19 Cleanup : glite-security-voms-api-cpp 13/19 Cleanup : glite-security-gsoap-plugin 14/19 Cleanup : gridsite-shared 15/19 Cleanup : gridsite-commands 16/19 Cleanup : glite-ce-monitor-client-api-c 17/19 Installed: MySQL-server-community.x86_64 0:5.1.39-0.rhel5 Updated: glite-ce-cream-cli.x86_64 0:1.13.1-0.sl5 glite-ce-cream-client-api-c.x86_64 0:1.13.1-0.sl5 glite-ce-monitor-client-api-c.x86_64 0:1.13.1-0.sl5 glite-security-gsoap-plugin.x86_64 0:2.1.2-2.sl5 glite-security-util-java.noarch 0:2.8.6-1.GL32 glite-security-voms-api-cpp.x86_64 0:1.9.19-2.sl5 gridsite-commands.x86_64 0:1.7.9-3.sl5 gridsite-shared.x86_64 0:1.7.9-3.sl5 Replaced: mysql.x86_64 0:5.0.77-4.el5_5.4 mysql-server.x86_64 0:5.0.77-4.el5_5.4 Complete!